STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47828.1Hydroxymethylglutaryl-CoA reductase (NADPH). (428 aa)    
Predicted Functional Partners:
AEI47449.1
1,4-dihydroxy-2-naphthoateoctaprenyltransferase.
    
 
 0.769
AEI47829.1
Extradiol ring-cleavage dioxygenase class III protein subunit B.
       0.727
AEI47827.1
Enoyl-CoA hydratase/isomerase.
     
 0.635
Runsl_4050
Lipoyl synthase.
 
 
    0.606
AEI48347.1
Long-chain-fatty-acid--CoA ligase.
 
 
 0.548
AEI49288.1
Polyprenyl synthetase.
 
 
 0.548
AEI47830.1
alpha-L-arabinofuranosidase domain protein.
       0.512
AEI46923.1
Monooxygenase FAD-binding protein.
   
  
 0.503
AEI46962.1
Hypothetical protein.
   
  
 0.503
AEI46963.1
FAD dependent oxidoreductase.
   
  
 0.503
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.