STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47840.150S ribosomal protein L34. (52 aa)    
Predicted Functional Partners:
AEI47290.1
50S ribosomal protein L28.
  
 
 0.990
AEI50889.1
30S ribosomal protein S20.
  
 
 0.989
AEI47592.1
Ribosomal protein L13.
  
 
 0.987
AEI47941.1
50S ribosomal protein L21.
  
 
 0.987
AEI49526.1
30S ribosomal protein S21.
   
 
 0.987
AEI48836.1
Ribosomal protein S12.
   
 
 0.986
AEI48112.1
30S ribosomal protein S14.
  
 
 0.985
AEI48102.1
50S ribosomal protein L36.
  
 
 0.983
AEI49088.1
50S ribosomal protein L32.
   
 
 0.983
AEI51720.1
50S ribosomal protein L35.
  
 
 0.983
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.