STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47851.1Hypothetical protein. (119 aa)    
Predicted Functional Partners:
AEI47852.1
Hypothetical protein.
       0.773
AEI49578.1
Hypothetical protein.
  
     0.673
AEI51270.1
Hypothetical protein.
  
     0.668
AEI47850.1
Protein of unknown function DUF58.
       0.651
AEI47514.1
Hypothetical protein.
 
     0.590
AEI47253.1
Hypothetical protein.
  
     0.562
AEI51471.1
Peptidoglycan-binding lysin domain protein.
  
     0.549
AEI49743.1
Phage shock protein C, PspC.
  
     0.533
AEI49362.1
Hypothetical protein.
  
     0.531
AEI47886.1
Hypothetical protein.
  
     0.524
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.