Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47853.1Biopolymer transport protein ExbD/TolR. (130 aa)    
Predicted Functional Partners:
AEI47854.1
MotA/TolQ/ExbB proton channel.
 
 
 0.991
AEI47870.1
MotA/TolQ/ExbB proton channel.
  
 
 0.891
AEI50893.1
Hypothetical protein.
 
 
 0.801
AEI50890.1
Tetratricopeptide TPR_1 repeat-containing protein.
 
  
 0.792
AEI47867.1
TonB family protein.
 
 
 0.705
AEI46829.1
TonB family protein.
 
 
 0.667
AEI49277.1
TonB family protein.
 
 
 0.635
AEI47598.1
TonB family protein.
 
 
 0.634
AEI47546.1
Hypothetical protein.
 
 
 0.622
AEI50891.1
Hypothetical protein.
 
  
 0.562
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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