STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47858.1Alpha/beta hydrolase fold protein. (259 aa)    
Predicted Functional Partners:
AEI47857.1
Gamma-glutamyltransferase.
       0.762
AEI47253.1
Hypothetical protein.
  
     0.555
AEI49561.1
Hypothetical protein.
  
     0.538
AEI47856.1
Hypothetical protein.
       0.536
AEI49649.1
Protein of unknown function DUF490.
  
     0.526
AEI50436.1
Hypothetical protein.
  
     0.498
AEI48514.1
Hypothetical protein.
 
    0.491
AEI49882.1
Gliding motility-associated protein GldM.
  
     0.475
AEI48127.1
Hypothetical protein.
  
     0.466
AEI50713.1
Sulfate transporter/antisigma-factor antagonist STAS.
  
   
 0.459
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.