STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47874.1GH3 auxin-responsive promoter. (496 aa)    
Predicted Functional Partners:
AEI50864.1
Alpha/beta hydrolase fold protein.
  
   
 0.761
AEI51455.1
Protein of unknown function DUF2480.
  
     0.698
AEI47039.1
acyl-CoA reductase.
 
 
 
 0.671
AEI47446.1
Restriction endonuclease, type I, EcoRI, R subunit/Type III.
  
     0.634
AEI48136.1
Hypothetical protein.
  
     0.598
AEI50587.1
Hypothetical protein.
 
     0.592
AEI51169.1
Hypothetical protein.
  
     0.588
AEI49440.1
Mammalian cell entry related domain protein.
  
     0.575
AEI51710.1
DoxX family protein.
  
     0.554
AEI49878.1
Uroporphyrinogen III synthase HEM4.
  
     0.516
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.