Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47875.1Lytic transglycosylase catalytic. (342 aa)    
Predicted Functional Partners:
AEI51899.1
Signal peptidase I.
 
  
 0.666
AEI48202.1
Cell division protein FtsA.
 
     0.554
AEI51503.1
OmpA/MotB domain protein.
  
     0.544
AEI46633.1
OmpA/MotB domain protein.
  
     0.542
AEI49218.1
OmpA/MotB domain protein.
  
     0.535
AEI48025.1
OmpA/MotB domain protein.
  
     0.525
AEI48637.1
OmpA/MotB domain protein.
  
     0.518
AEI49730.1
Protein of unknown function DUF214.
  
     0.479
AEI50696.1
Peptidoglycan glycosyltransferase.
 
   
 0.467
AEI50221.1
Penicillin-binding protein 2.
 
  
 0.455
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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