Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47886.1Hypothetical protein. (1660 aa)    
Predicted Functional Partners:
AEI47540.1
TonB-dependent receptor plug.
  
 
 0.776
AEI48014.1
Hypothetical protein.
  
     0.768
AEI49631.1
Tetratricopeptide domain protein.
  
     0.768
AEI51183.1
TPR repeat-containing protein.
 
 
   0.768
AEI47335.1
Putative membrane protein.
  
 
 
 0.767
AEI48596.1
Hypothetical protein.
  
     0.767
AEI49883.1
Gliding motility associated protein GldN.
  
     0.766
AEI49877.1
Hypothetical protein.
  
     0.765
AEI50527.1
Hypothetical protein.
  
     0.764
AEI47514.1
Hypothetical protein.
  
     0.762
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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