Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47887.1Hypothetical protein. (427 aa)    
Predicted Functional Partners:
AEI51601.1
Hypothetical protein.
  
     0.634
AEI50587.1
Hypothetical protein.
  
     0.632
AEI47446.1
Restriction endonuclease, type I, EcoRI, R subunit/Type III.
 
     0.577
AEI46551.1
Protein of unknown function, membrane YfhO.
  
     0.568
AEI47888.1
Peptidase M28.
       0.543
AEI51739.1
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family.
 
      0.536
AEI47113.1
Hypothetical protein.
 
     0.533
AEI47886.1
Hypothetical protein.
       0.521
AEI48203.1
Hypothetical protein.
  
     0.500
AEI47896.1
DNA repair protein recO.
 
     0.479
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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