Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47888.1Peptidase M28. (489 aa)    
Predicted Functional Partners:
AEI51433.1
TonB-dependent receptor.
  
     0.565
AEI51432.1
Hypothetical protein.
  
     0.554
AEI47887.1
Hypothetical protein.
       0.543
AEI49422.1
Peptidase M28.
  
     0.541
AEI46822.1
Peptidase S41.
  
   
 0.479
AEI47269.1
Peptidase S9 prolyl oligopeptidase active site domain protein.
  
    0.475
AEI48178.1
Hypothetical protein.
  
  
  0.462
AEI47886.1
Hypothetical protein.
 
     0.458
AEI50283.1
Endoribonuclease L-PSP.
  
     0.445
AEI49554.1
Hypothetical protein.
  
     0.431
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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