Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47892.1Alpha-2-macroglobulin domain protein. (1854 aa)    
Predicted Functional Partners:
AEI47929.1
Penicillin-binding protein 1C.
 
   
 0.845
AEI48176.1
OmpA/MotB domain protein.
  
    0.511
AEI46565.1
Hypothetical protein.
  
     0.484
AEI46675.1
Hypothetical protein.
  
    0.473
AEI51218.1
OmpA/MotB domain protein.
  
    0.462
AEI47748.1
Type III restriction protein res subunit.
 
    0.451
AEI49858.1
Hypothetical protein.
  
    0.442
AEI48015.1
TonB-dependent receptor.
  
     0.441
AEI47115.1
OmpA/MotB domain protein.
  
    0.434
AEI51120.1
PpiC-type peptidyl-prolyl cis-trans isomerase.
  
    0.429
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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