STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47896.1DNA repair protein recO. (231 aa)    
Predicted Functional Partners:
AEI49925.1
Recombination protein recR.
   
 
 0.889
AEI51685.1
PhoH family protein.
  
  
 0.870
AEI49649.1
Protein of unknown function DUF490.
 
     0.748
AEI48195.1
Hypothetical protein.
  
     0.742
AEI47738.1
Outer membrane lipoprotein carrier protein LolA.
 
     0.729
AEI49459.1
Hypothetical protein.
  
     0.718
AEI50632.1
Protein of unknown function DUF164.
  
     0.664
AEI47860.1
DNA polymerase III, beta subunit.
  
   
 0.647
AEI46984.1
Hypothetical protein.
  
     0.642
AEI47340.1
Thymidine kinase.
      0.642
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.