STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47913.1Protein of unknown function DUF95 transmembrane. (315 aa)    
Predicted Functional Partners:
AEI47912.1
RDD domain containing protein.
 
    0.935
AEI47914.1
Hypothetical protein.
 
     0.933
AEI48293.1
Hypothetical protein.
     0.855
AEI51765.1
Protein of unknown function DUF58.
 
  
 0.837
AEI48294.1
Hypothetical protein.
 
     0.821
AEI51171.1
Nucleoside recognition domain protein.
   
  
 0.570
AEI48824.1
Hypothetical protein.
  
     0.537
AEI47911.1
Thioesterase superfamily protein.
       0.534
AEI48292.1
ATPase associated with various cellular activities AAA_3.
 
    0.453
AEI50690.1
TonB-dependent receptor plug.
  
    0.430
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.