STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47919.1Polysaccharide export protein. (262 aa)    
Predicted Functional Partners:
AEI47921.1
Capsular exopolysaccharide family.
 
 
 0.990
AEI51021.1
Capsular exopolysaccharide family.
 
 
 0.974
AEI51022.1
Polysaccharide export protein.
  
  
 
0.928
AEI50312.1
Soluble ligand binding domain protein.
     
  0.900
AEI47920.1
PHP domain protein.
 
     0.850
AEI48002.1
Teichoic-acid-transporting ATPase.
  
  
 0.693
AEI48003.1
ABC-2 type transporter.
  
  
 0.691
AEI47918.1
Ribonuclease H.
       0.517
AEI48004.1
Hypothetical protein.
  
 
 0.512
AEI49772.1
Lipopolysaccharide biosynthesis protein.
  
 
 0.512
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.