STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47923.1Tetratricopeptide TPR_2 repeat-containing protein. (231 aa)    
Predicted Functional Partners:
AEI50432.1
Surface antigen (D15).
 
  
 0.799
AEI51195.1
PpiC-type peptidyl-prolyl cis-trans isomerase.
 
   0.781
AEI48771.1
Outer membrane chaperone Skp (OmpH).
  
  
 0.778
AEI50738.1
Hypothetical protein.
  
     0.762
AEI48773.1
Outer membrane protein assembly complex, YaeT protein.
 
  
 0.761
AEI48203.1
Hypothetical protein.
  
   
 0.755
AEI50590.1
Hypothetical protein.
 
   
 0.753
AEI50588.1
Outer membrane assembly lipoprotein YfiO.
 
   
 0.745
AEI49089.1
Protein of unknown function DUF177.
  
    0.743
AEI50587.1
Hypothetical protein.
  
    0.740
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.