STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47937.1GDP-mannose 4,6-dehydratase. (371 aa)    
Predicted Functional Partners:
AEI48618.1
GDP-L-fucose synthase.
 0.996
AEI48575.1
Mannose-1-phosphate guanylyltransferase.
 
 
 0.955
AEI50443.1
Polysaccharide biosynthesis protein CapD.
  
  
 0.845
AEI49763.1
Sugar transferase.
  
  
 0.693
AEI48144.1
Sugar transferase.
  
  
 0.687
AEI47936.1
Sporulation domain-containing protein.
       0.684
Runsl_3935
Sugar transferase.
  
  
 0.677
AEI50992.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.677
AEI47921.1
Capsular exopolysaccharide family.
  
  
 0.541
AEI51021.1
Capsular exopolysaccharide family.
  
  
 0.541
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.