STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47942.1DNA-formamidopyrimidine glycosylase. (271 aa)    
Predicted Functional Partners:
AEI48486.1
DNA polymerase I.
  
  
 0.966
AEI49560.1
Dephospho-CoA kinase.
  
  
 0.803
AEI49279.1
UvrABC system protein C.
  
  
 0.681
AEI46753.1
Exonuclease RNase T and DNA polymerase III.
   
  
 0.581
AEI47943.1
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C.
  
    0.552
AEI47178.1
Conserved hypothetical protein CHP02757.
   
  
 0.528
AEI48529.1
Endonuclease III.
   
  
 0.528
AEI49802.1
DNA-(apurinic or apyrimidinic site) lyase.
   
  
 0.528
AEI47941.1
50S ribosomal protein L21.
     
 0.520
AEI48154.1
GTP-binding protein Era-like-protein.
 
  
 0.435
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.