STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47944.1Hypothetical protein. (488 aa)    
Predicted Functional Partners:
AEI49529.1
Iojap-like protein.
  
  
 0.687
AEI48621.1
Shikimate dehydrogenase substrate binding domain protein.
  
  
 0.669
AEI47945.1
Hypothetical protein.
       0.648
AEI49543.1
Riboflavin biosynthesis protein RibD.
  
  
 0.523
AEI47404.1
Regulatory protein MarR.
  
     0.493
AEI47943.1
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C.
  
    0.492
AEI50442.1
YjeF-related protein.
  
  
 0.466
AEI47941.1
50S ribosomal protein L21.
 
   
 0.465
AEI50705.1
Double-transmembrane region domain protein.
  
     0.446
AEI51657.1
Competence/damage-inducible protein CinA.
  
  
 0.442
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.