Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEI47949.1Phytanoyl-CoA dioxygenase. (300 aa)    
Predicted Functional Partners:
AEI47950.1
Hypothetical protein.
 
    0.920
AEI47951.1
Methyltransferase type 11.
 
     0.849
AEI47947.1
Glycosyl transferase family 2.
 
    0.842
AEI47948.1
Glycosyl transferase family 2.
  
    0.774
AEI51588.1
Hypothetical protein.
  
     0.733
AEI51533.1
Glycoside hydrolase family 42 domain protein.
  
     0.716
AEI49598.1
Hypothetical protein.
  
     0.706
AEI51532.1
Glycoside hydrolase family 42 domain protein.
  
     0.699
AEI50226.1
Ig family protein.
  
     0.646
AEI46885.1
Phosphate-selective porin O and P.
  
     0.629
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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