STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47957.1Hypothetical protein. (50 aa)    
Predicted Functional Partners:
AEI47956.1
50S ribosomal protein L33.
   
   0.906
AEI48117.1
Ribosomal protein L29.
  
 
   0.816
AEI47290.1
50S ribosomal protein L28.
   
   0.801
AEI51100.1
50S ribosomal protein L25.
  
 
   0.798
AEI47123.1
30S ribosomal protein S10.
    
   0.750
AEI47590.1
Ribosomal protein S2.
    
   0.750
AEI47591.1
Ribosomal protein S9.
    
   0.750
AEI47592.1
Ribosomal protein L13.
    
   0.750
AEI47840.1
50S ribosomal protein L34.
    
   0.750
AEI47940.1
50S ribosomal protein L27.
    
   0.750
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.