STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47968.1PrpF protein. (370 aa)    
Predicted Functional Partners:
AEI47971.1
LmbE family protein.
 
  
 0.993
AEI47969.1
Phosphogluconate dehydrogenase, NAD-binding protein.
 
    0.943
AEI47970.1
Dimethylmenaquinone methyltransferase.
 
   
 0.941
AEI51256.1
Aconitate hydratase.
  
  
 0.872
AEI47973.1
Biphenyl-2,3-diol 1,2-dioxygenase.
 
   
 0.864
AEI47972.1
CHP02436-containing protein.
       0.736
AEI46947.1
Amidohydrolase 2.
 
   
 0.677
AEI46926.1
Biphenyl-2,3-diol 1,2-dioxygenase.
 
   
 0.651
AEI51866.1
Citrate synthase I.
  
  
 0.598
AEI46970.1
4-hydroxybenzoate 3-monooxygenase.
  
   
 0.547
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.