STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47970.1Dimethylmenaquinone methyltransferase. (206 aa)    
Predicted Functional Partners:
AEI47971.1
LmbE family protein.
  
 0.996
AEI47969.1
Phosphogluconate dehydrogenase, NAD-binding protein.
     0.993
AEI47968.1
PrpF protein.
 
   
 0.941
AEI51091.1
Dimethylmenaquinone methyltransferase.
  
  
 
0.926
AEI47196.1
Acetolactate synthase, small subunit.
     
  0.900
AEI47197.1
Acetolactate synthase, large subunit, biosynthetic type.
     
  0.900
AEI47973.1
Biphenyl-2,3-diol 1,2-dioxygenase.
 
   
 0.809
AEI47183.1
3-isopropylmalate dehydrogenase.
      0.797
AEI47972.1
CHP02436-containing protein.
       0.752
AEI46926.1
Biphenyl-2,3-diol 1,2-dioxygenase.
 
   
 0.508
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.