STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47973.1Biphenyl-2,3-diol 1,2-dioxygenase. (318 aa)    
Predicted Functional Partners:
AEI47971.1
LmbE family protein.
 
     0.898
AEI47969.1
Phosphogluconate dehydrogenase, NAD-binding protein.
 
     0.868
AEI47968.1
PrpF protein.
 
   
 0.864
AEI47970.1
Dimethylmenaquinone methyltransferase.
 
   
 0.809
AEI46947.1
Amidohydrolase 2.
 
   
 0.769
AEI46962.1
Hypothetical protein.
 
   
 0.701
AEI46954.1
Long-chain-fatty-acid--CoA ligase.
  
     0.641
AEI47972.1
CHP02436-containing protein.
       0.584
AEI46970.1
4-hydroxybenzoate 3-monooxygenase.
 
   
 0.573
AEI47974.1
Hypothetical protein.
       0.538
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.