Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEI47976.1Transcriptional regulator, AraC family. (292 aa)    
Predicted Functional Partners:
AEI46970.1
4-hydroxybenzoate 3-monooxygenase.
 
   
 0.596
AEI47977.1
Alkylphosphonate utilization operon protein PhnA.
  
    0.579
AEI49503.1
Transcriptional regulator, AraC family.
  
   0.565
AEI47975.1
Hypothetical protein.
       0.539
AEI46971.1
3-oxoadipate enol-lactonase.
 
   
 0.527
AEI47968.1
PrpF protein.
 
     0.527
AEI51061.1
Transcriptional regulator, AraC family.
 
   0.524
AEI49502.1
Transcriptional regulator, AraC family.
  
   0.504
AEI49014.1
Transcriptional regulator with cupin sensor, AraC family.
  
   0.499
AEI49682.1
Transcriptional regulator, AraC family.
 
   0.489
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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