STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47981.13'-5' exonuclease. (383 aa)    
Predicted Functional Partners:
AEI47725.1
Ribonuclease R.
   
 0.920
AEI49349.1
RNA binding S1 domain protein.
  
 0.855
AEI48099.1
Ribosomal protein S4.
   
  0.854
AEI48100.1
30S ribosomal protein S11.
   
  0.843
AEI51398.1
Ribosomal RNA small subunit methyltransferase A.
   
 
 0.843
AEI48116.1
30S ribosomal protein S17.
    
 
 0.782
AEI48101.1
30S ribosomal protein S13.
    
   0.765
AEI48835.1
Ribosomal protein S7.
  
   0.762
AEI48836.1
Ribosomal protein S12.
   
   0.758
AEI50969.1
Ribosomal protein S15.
    
   0.752
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.