STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47999.1WbqC-like family protein. (232 aa)    
Predicted Functional Partners:
AEI46599.1
ATP synthase subunit delta.
  
 0.963
AEI46602.1
ATP synthase subunit a.
  
 0.963
AEI47383.1
ATP synthase subunit alpha.
  
 0.963
AEI48042.1
ATPase, F1 complex, delta/epsilon subunit.
  
 0.963
AEI48043.1
ATP synthase subunit beta.
  
 0.963
AEI46601.1
ATP synthase subunit c.
  
 0.962
AEI46600.1
ATP synthase subunit b.
  
 
 0.942
AEI48001.1
DegT/DnrJ/EryC1/StrS aminotransferase.
 
    0.800
AEI48119.1
Ribosomal protein S3.
  
 
 0.793
AEI48118.1
50S ribosomal protein L16.
  
 
 0.788
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.