STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48001.1DegT/DnrJ/EryC1/StrS aminotransferase. (357 aa)    
Predicted Functional Partners:
AEI48000.1
Hypothetical protein.
  
  
 0.808
AEI47999.1
WbqC-like family protein.
 
    0.800
AEI48002.1
Teichoic-acid-transporting ATPase.
     
 0.768
AEI50443.1
Polysaccharide biosynthesis protein CapD.
  
 0.733
AEI48003.1
ABC-2 type transporter.
     
 0.663
AEI48004.1
Hypothetical protein.
       0.544
AEI47998.1
Acyl-(acyl carrier protein)-like protein.
 
   
 0.524
AEI47216.1
Nucleotide sugar dehydrogenase.
 
  
 0.482
AEI47947.1
Glycosyl transferase family 2.
 
    0.451
AEI49258.1
WxcM-like domain-containing protein.
 
  
 0.450
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.