STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48017.1S-adenosylmethionine:tRNAribosyltransferase-isom erase. (347 aa)    
Predicted Functional Partners:
AEI47214.1
Queuine tRNA-ribosyltransferase.
 
 0.986
AEI48916.1
Holliday junction ATP-dependent DNA helicase ruvA.
  
  
 0.674
AEI47768.1
Holliday junction ATP-dependent DNA helicase ruvB.
 
  
 0.673
AEI47292.1
Holliday junction ATP-dependent DNA helicase ruvB.
  
  
 0.631
AEI48018.1
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
       0.626
AEI48016.1
Hypothetical protein.
       0.565
AEI48015.1
TonB-dependent receptor.
       0.543
AEI51325.1
Iron-sulfur cluster binding protein.
 
   
 0.521
AEI51126.1
Undecaprenyl-diphosphatase.
 
   
 0.494
AEI48197.1
Metalloprotease ybeY.
 
   
 0.457
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.