STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48021.1Hypothetical protein. (1142 aa)    
Predicted Functional Partners:
AEI48022.1
Hypothetical protein.
       0.601
AEI47361.1
Helix-turn-helix domain protein.
  
     0.532
AEI51684.1
Hypothetical protein.
  
    0.479
AEI47037.1
Outer membrane protein.
  
     0.477
AEI48020.1
Hypothetical protein.
       0.469
AEI49271.1
Hypothetical protein.
  
     0.454
AEI48023.1
Monofunctional biosynthetic peptidoglycan transglycosylase.
       0.447
AEI48669.1
Hypothetical protein.
  
     0.439
AEI48985.1
Hypothetical protein.
  
    0.439
AEI47543.1
Hypothetical protein.
  
     0.431
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.