STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48025.1OmpA/MotB domain protein. (236 aa)    
Predicted Functional Partners:
AEI47159.1
OmpA/MotB domain protein.
  
 0.794
AEI48024.1
Oxygen-independent coproporphyrinogen III oxidase.
       0.689
AEI47540.1
TonB-dependent receptor plug.
     
 0.633
AEI48023.1
Monofunctional biosynthetic peptidoglycan transglycosylase.
 
     0.631
AEI48026.1
Hypothetical protein.
       0.547
AEI48027.1
Hypothetical protein.
       0.547
AEI48028.1
Transcriptional regulator, PadR-like family.
       0.547
AEI47875.1
Lytic transglycosylase catalytic.
  
     0.525
AEI49405.1
Lytic transglycosylase catalytic.
 
 
 
 0.507
AEI50334.1
OmpA/MotB domain protein.
  
 
0.463
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.