STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48037.1RNA polymerase, sigma-24 subunit, ECF subfamily. (176 aa)    
Predicted Functional Partners:
AEI48038.1
Anti-sigma-K factor RskA.
  
    0.751
AEI48495.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
     0.742
AEI47547.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
     0.644
AEI51243.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
     0.519
AEI47110.1
Processing peptidase.
  
    0.435
AEI48036.1
NADPH-dependent FMN reductase.
  
    0.408
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.