STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48038.1Anti-sigma-K factor RskA. (523 aa)    
Predicted Functional Partners:
AEI48037.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
    0.751
AEI50849.1
Lipoprotein.
  
     0.709
AEI50317.1
Hypothetical protein.
  
     0.677
AEI51852.1
Hypothetical protein.
  
     0.661
AEI48431.1
Hypothetical protein.
  
     0.624
AEI50687.1
NUDIX hydrolase.
  
     0.614
AEI49877.1
Hypothetical protein.
  
     0.593
AEI48596.1
Hypothetical protein.
  
     0.582
AEI50900.1
Tetratricopeptide TPR_1 repeat-containing protein.
  
   
 0.576
Runsl_0856
PKD domain containing protein.
  
     0.575
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.