STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48049.1Malate dehydrogenase. (309 aa)    
Predicted Functional Partners:
AEI51866.1
Citrate synthase I.
  
 0.997
AEI49293.1
Fumarate hydratase class II.
  
 0.983
AEI51123.1
Malic protein NAD-binding protein.
  
 0.979
AEI47513.1
Isocitrate dehydrogenase, NADP-dependent.
  
 0.977
AEI51415.1
Aspartate transaminase.
  
 0.932
AEI51653.1
Phosphoenolpyruvate carboxykinase (ATP).
  
 
 0.930
AEI48189.1
Phosphoenolpyruvate carboxylase.
     
 0.923
AEI51256.1
Aconitate hydratase.
  
 0.917
AEI50709.1
Malate dehydrogenase (acceptor).
    
 0.916
AEI47002.1
Malate dehydrogenase.
    
 0.913
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.