STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48070.1Hypothetical protein. (819 aa)    
Predicted Functional Partners:
AEI48253.1
Protein of unknown function DUF541.
  
     0.562
AEI48071.1
Aldo/keto reductase.
       0.556
AEI49779.1
Carbohydrate binding family 6.
  
     0.517
AEI48634.1
Hypothetical protein.
  
     0.500
AEI48620.1
Metallophosphoesterase.
  
     0.472
AEI48069.1
Phosphate transporter.
       0.461
AEI49609.1
Hypothetical protein.
  
     0.451
AEI50479.1
Hypothetical protein.
 
     0.438
AEI51437.1
NIPSNAP family containing protein.
   
    0.430
AEI47570.1
Outer membrane efflux protein.
  
  
 0.427
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.