STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48079.1Orotidine 5'-phosphate decarboxylase. (299 aa)    
Predicted Functional Partners:
AEI51538.1
Orotate phosphoribosyltransferase.
  
 
 0.993
AEI49735.1
Uracil phosphoribosyltransferase.
  
 
 0.981
AEI50882.1
Phosphoribosyltransferase.
  
 
 0.981
AEI47740.1
Dihydroorotate dehydrogenase.
 
  
 0.941
AEI47744.1
Uracil phosphoribosyltransferase.
  
 
 0.935
AEI48187.1
Aspartate carbamoyltransferase.
  
  
 0.933
Runsl_4437
Carbamoyl-phosphate synthase, large subunit.
  
  
 0.933
AEI48096.1
Carbamoyl-phosphate synthase, small subunit.
  
  
 0.928
AEI47497.1
Uridylate kinase.
   
 
 0.927
AEI46611.1
Multifunctional protein surE.
    
 0.919
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.