STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48082.1Isoamylase N-terminal domain-containing protein. (103 aa)    
Predicted Functional Partners:
AEI46593.1
Starch synthase.
  
  
 0.829
Runsl_3241
tRNA-Met.
  
 
 0.825
AEI46911.1
alpha-L-rhamnosidase.
  
 
 0.594
AEI48138.1
Hypothetical protein.
  
 
 0.594
AEI49119.1
Hypothetical protein.
  
 
 0.594
AEI50748.1
Sucrose phosphate synthase sucrose phosphatase-like domain-containing protein.
  
 0.518
AEI47016.1
Glycosyl transferase group 1.
  
 0.516
AEI46528.1
Alpha amylase catalytic region.
 
  
 0.499
AEI51011.1
Glycosyl transferase group 1.
  
 0.481
AEI48083.1
Globin.
       0.465
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.