STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48104.1Methionine aminopeptidase, type I. (267 aa)    
Predicted Functional Partners:
AEI48108.1
Ribosomal protein S5.
 
   0.994
AEI48110.1
Ribosomal protein L6.
 
 
 0.992
AEI48109.1
Ribosomal protein L18.
 
 
 0.991
AEI48101.1
30S ribosomal protein S13.
 
 
 0.988
AEI48115.1
Ribosomal protein L14.
 
   0.988
AEI48111.1
Ribosomal protein S8.
 
 
 0.987
AEI48106.1
Ribosomal protein L15.
 
   0.986
AEI48105.1
Preprotein translocase, SecY subunit.
 
  
 0.982
AEI48107.1
Ribosomal protein L30.
  
 
 0.982
AEI48118.1
50S ribosomal protein L16.
 
 
 0.982
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.