STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48143.1Glycosyl transferase group 1. (395 aa)    
Predicted Functional Partners:
AEI48144.1
Sugar transferase.
  
 0.984
AEI48145.1
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family.
 
     0.826
AEI48142.1
Glycosyl transferase family 2.
 
    0.673
AEI48161.1
Glycosyl transferase group 1.
  
     0.656
AEI50443.1
Polysaccharide biosynthesis protein CapD.
 
  
 0.587
Runsl_3935
Sugar transferase.
  
 0.564
AEI47921.1
Capsular exopolysaccharide family.
 
  
 0.563
AEI51021.1
Capsular exopolysaccharide family.
 
  
 0.544
AEI50995.1
UDP-glucuronate 4-epimerase.
 
    0.523
AEI48141.1
Methylcrotonoyl-CoA carboxylase.
       0.508
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.