STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48147.1Ubiquinone/menaquinone biosynthesis methyltransferase ubiE. (240 aa)    
Predicted Functional Partners:
AEI47449.1
1,4-dihydroxy-2-naphthoateoctaprenyltransferase.
    
 0.906
AEI51378.1
NmrA family protein.
     
  0.900
AEI48148.1
PorT-related protein.
 
     0.839
AEI47951.1
Methyltransferase type 11.
  
 
   0.661
Runsl_3104
Trans-hexaprenyltranstransferase.
 
 
 0.629
AEI48146.1
Hypothetical protein.
       0.492
AEI48149.1
2OG-Fe(II) oxygenase.
       0.473
AEI49288.1
Polyprenyl synthetase.
 
 
 0.408
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.