STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48154.1GTP-binding protein Era-like-protein. (327 aa)    
Predicted Functional Partners:
AEI48197.1
Metalloprotease ybeY.
 
  
 0.864
AEI51398.1
Ribosomal RNA small subunit methyltransferase A.
  
 
 
 0.849
AEI50439.1
30S ribosomal protein S16.
 
 
 0.829
AEI48835.1
Ribosomal protein S7.
    
 0.828
Runsl_3923
tRNA-Gln.
  
   0.792
AEI48152.1
GTP-binding protein engA.
 
   
0.778
AEI47167.1
Ribonuclease 3.
 
  
 0.750
AEI50969.1
Ribosomal protein S15.
 
 
 0.726
AEI47105.1
GTP-binding protein engB.
 
  
 0.709
AEI47958.1
Signal recognition particle-docking protein FtsY.
  
   
 0.707
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.