Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEI48163.1Glycosyl transferase group 1. (348 aa)    
Predicted Functional Partners:
AEI48164.1
Cephalosporin-C deacetylase.
       0.551
AEI48161.1
Glycosyl transferase group 1.
 
     0.537
AEI48162.1
Methyltransferase type 11.
       0.474
AEI48160.1
Hypothetical protein.
  
    0.430
AEI49568.1
Nucleotide sugar dehydrogenase.
 
  
 0.419
AEI47997.1
Glycosyl transferase family 2.
 
    0.415
AEI47802.1
1,4-alpha-glucan branching enzyme.
   
 0.412
AEI48082.1
Isoamylase N-terminal domain-containing protein.
   
 0.412
AEI48415.1
1,4-alpha-glucan-branching enzyme.
   
 0.412
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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