STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48172.1Peptide chain release factor 1. (358 aa)    
Predicted Functional Partners:
AEI49366.1
protein-(glutamine-N5) methyltransferase, release factor-specific.
 
 0.992
AEI47592.1
Ribosomal protein L13.
 
 0.963
AEI47940.1
50S ribosomal protein L27.
 
 0.962
AEI51721.1
50S ribosomal protein L20.
 
 0.961
AEI48835.1
Ribosomal protein S7.
  
 0.956
AEI48124.1
Ribosomal protein L4/L1e.
 
 0.951
AEI48118.1
50S ribosomal protein L16.
 
 0.950
AEI48097.1
50S ribosomal protein L17.
 
 0.948
AEI48099.1
Ribosomal protein S4.
 
 
 0.943
AEI48125.1
50S ribosomal protein L3.
 0.941
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.