STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48176.1OmpA/MotB domain protein. (521 aa)    
Predicted Functional Partners:
AEI47335.1
Putative membrane protein.
 
     0.638
AEI47886.1
Hypothetical protein.
 
 
   0.561
AEI49375.1
Surface antigen (D15).
 
 
 0.546
AEI48190.1
Hypothetical protein.
  
     0.542
AEI48772.1
Outer membrane chaperone Skp (OmpH).
 
 
 0.540
AEI51183.1
TPR repeat-containing protein.
  
 
   0.538
AEI50477.1
Gliding motility-associated lipoprotein GldJ.
  
    0.513
AEI47892.1
Alpha-2-macroglobulin domain protein.
  
    0.511
AEI48175.1
VRR-NUC domain-containing protein.
       0.502
AEI48514.1
Hypothetical protein.
  
    0.497
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.