STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48185.1Hypothetical protein. (106 aa)    
Predicted Functional Partners:
AEI51540.1
Response regulator receiver protein.
 
 
   0.737
AEI49399.1
Metallophosphoesterase.
  
     0.694
AEI48044.1
Integral membrane sensor signal transduction histidine kinase.
  
 
   0.692
AEI48186.1
Hypothetical protein.
       0.664
AEI48951.1
Hypothetical protein.
  
     0.632
AEI50177.1
Protein of unknown function DUF1573.
  
     0.622
AEI48772.1
Outer membrane chaperone Skp (OmpH).
  
     0.616
AEI47113.1
Hypothetical protein.
  
     0.607
AEI51397.1
Multi-sensor hybrid histidine kinase.
  
 
 0.579
AEI48952.1
Hypothetical protein.
  
    0.574
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.