STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48188.1Coagulation factor 5/8 type domain protein. (582 aa)    
Predicted Functional Partners:
AEI47825.1
Xylan 1,4-beta-xylosidase.
    
 0.909
AEI48695.1
Uronate isomerase.
 
  
 0.858
AEI49339.1
Xylose isomerase.
  
 
 0.850
AEI49749.1
L-arabinose isomerase.
  
 
 0.816
AEI50181.1
Putative L-arabinose isomerase protein.
  
 
 0.816
AEI51892.1
Alditol oxidase.
   
 
  0.807
AEI49041.1
Beta-glucuronidase.
    
 0.806
AEI46828.1
GHMP kinase.
     
  0.800
AEI48187.1
Aspartate carbamoyltransferase.
       0.675
AEI51465.1
Cyclomaltodextrinase.
  
   
 0.507
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.