STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48196.1tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG. (620 aa)    
Predicted Functional Partners:
AEI51212.1
tRNA modification GTPase mnmE.
 
 0.993
AEI47212.1
Ribosomal RNA small subunit methyltransferase G.
  
  
 0.867
AEI49011.1
DNA mismatch repair protein mutS.
 
   
 0.628
AEI48197.1
Metalloprotease ybeY.
   
 
 0.623
AEI47259.1
DNA mismatch repair protein mutL.
  
  
 0.617
AEI48152.1
GTP-binding protein engA.
  
   
 0.538
AEI49058.1
3-phosphoshikimate 1-carboxyvinyltransferase.
      0.529
AEI50848.1
3-dehydroquinate synthase.
 
 
    0.523
AEI48172.1
Peptide chain release factor 1.
 
  
 0.500
AEI50823.1
Pseudouridine synthase, RluA family.
 
   
 0.485
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.