STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48197.1Metalloprotease ybeY. (137 aa)    
Predicted Functional Partners:
AEI51685.1
PhoH family protein.
  
  
 0.929
AEI47824.1
Glycine dehydrogenase (decarboxylating).
   
    0.882
AEI48154.1
GTP-binding protein Era-like-protein.
 
  
 0.864
AEI48097.1
50S ribosomal protein L17.
 
 
 
 0.853
AEI47542.1
Diacylglycerol kinase.
 
  
 0.850
AEI50034.1
Rhodanese-like protein.
  
 
 0.847
AEI48116.1
30S ribosomal protein S17.
   
 
 0.813
AEI48106.1
Ribosomal protein L15.
 
 
 
 0.812
AEI47941.1
50S ribosomal protein L21.
   
 
 0.803
AEI48240.1
Ribosomal protein L11.
   
 
 0.802
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.