STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48207.1UDP-N-acetylmuramoylalanine--D-glutamate ligase. (454 aa)    
Predicted Functional Partners:
AEI48204.1
UDP-N-acetylmuramate--L-alanine ligase.
 
0.998
AEI47451.1
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase.
 
0.993
AEI48205.1
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.
 
  
 0.992
AEI48206.1
Cell cycle protein.
  
 0.981
AEI48192.1
Phospho-N-acetylmuramoyl-pentapeptide- transferase.
  
 0.960
AEI48459.1
Glutamate racemase.
 
  
 0.960
AEI48652.1
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase.
 
  
 0.960
AEI48203.1
Hypothetical protein.
  
  
 0.955
AEI50602.1
Cyanophycin synthetase.
  
  
 0.941
AEI50463.1
Alanine racemase.
 
 
 0.938
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.