STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48209.1Hypothetical protein. (662 aa)    
Predicted Functional Partners:
AEI48208.1
Hypothetical protein.
     
 0.783
AEI48759.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.721
AEI51177.1
Hypothetical protein.
 
     0.696
AEI49124.1
TetR family transcriptional regulator.
  
     0.643
Runsl_0157
Glycosyl hydrolase.
  
 0.611
AEI46636.1
Glycosyl transferase family 39.
  
     0.590
AEI46695.1
ATPase.
  
     0.589
AEI46821.1
Peptidase M14 carboxypeptidase A.
  
     0.562
AEI49409.1
LytTr DNA-binding region.
  
     0.554
AEI51576.1
Glycoside hydrolase family 43.
 
  
 0.546
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.