STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48213.1Heat shock protein DnaJ domain protein. (366 aa)    
Predicted Functional Partners:
AEI48212.1
Hypothetical protein.
       0.773
AEI48211.1
Dihydroorotase, multifunctional complex type.
       0.732
AEI49537.1
Protein of unknown function DUF820.
  
     0.610
AEI50989.1
TonB-dependent receptor.
  
     0.557
AEI50990.1
Hypothetical protein.
  
     0.546
AEI48210.1
Glycine cleavage system H protein.
       0.540
AEI49377.1
Conserved repeat domain protein.
  
     0.511
AEI49574.1
Protein of unknown function DUF820.
  
     0.421
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.